PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010090785.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family C2H2
Protein Properties Length: 502aa    MW: 55149.6 Da    PI: 9.1928
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010090785.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-05628123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C++C+k F r  nL+ H r H
  XP_010090785.1  6 FVCEICNKGFQRDQNLQLHRRGH 28
                    89*******************88 PP

2zf-C2H215.64.5e-0582104123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC +C+k +  +s+ k H++t+
  XP_010090785.1  82 WKCDKCSKKYAVQSDWKAHQKTC 104
                     58*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.16E-8528No hitNo description
Gene3DG3DSA:3.30.160.601.7E-5528IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.017628IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.949628IPR007087Zinc finger, C2H2
PfamPF121718.0E-5628IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SMARTSM00355984777IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.8E-570103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.16E-877103No hitNo description
SMARTSM003559482102IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLRQRTTT ETKKRVYICP EPTCVHHNPA  60
RALGDLTGIK KHFSRKHGEK KWKCDKCSKK YAVQSDWKAH QKTCGTREYK CDCGTIFSRR  120
DSFITHRAFC DALAEENNKV NQGLTTNNNV GPNDLHVQMP DQLMPSMPMM STTTTTTTEF  180
LNNTPTTFDP KSPLKPVHPG QDLMPLPFKS MINMAAAGSG MFSSTSPVLF GSPKSISSAS  240
SNLQLCSSNS PGFTNYLQDS KNGCTGQSPG SAHMSATALL QKAAQMGATA SSSTMNSPMT  300
QKSFVSSMAG PDHHLSAGNV YDHQRHHQTN LVGINGHGFS NTRSSTNTTT TQQEMSQMFD  360
PNTSGGSMAN HDHNLGINMY GQILMGSGGG LELQEENGTN NNNNSSVVLQ GKGGLERSPS  420
TGASRFGRGG GDRIVVDFMG IGESRGASSL HEQQRLDQLE AMRSVQQQQQ RLPIINHINP  480
FHQHQQQQQL SHGDSIESWT RP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010090785.10.0Zinc finger protein MAGPIE
SwissprotQ9SCQ62e-96IDD2_ARATH; Protein indeterminate-domain 2
TrEMBLW9R8A00.0W9R8A0_9R
STRINGPOPTR_0002s20950.11e-161(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21923085
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.18e-85indeterminate(ID)-domain 2